Also to answer daDraga's question, You can Alt F4 and restart the game, that will make you docked with the base again and you can relaunch. I have a certain ship that gets stuck at any and seems all prison stations so used that method a few times now
Thats the one Wanderer, No message though, starts auto docking, gets close to the door then just flips up like that and wont move, So I have learned now which stations to stay away from
Just an add to this, Please don't be like some pilots and wait till clan member jumps to a fighter and is ready to hunt you down before hailing. Had that happen a couple of times now Next time I might just continue on and kill the intruder anyway