Something got wrong, but not sure what I also checked what it could be.... Counting that OP said it was possible that you were logged when he was editing the chars to fix the rep with a Tohoku station, that made it the first time, but now he's over with editing em.
So that's why everything gets red only temporarly, until you come back again and find no BMM. Even if you go to any of the gates and dock, using F1 and coming back, the reps are ok So just get friendly with BMM
Yes, gates also have a rep side They change to red when they see you near (after the BMM guy) try fire some copper in NY and you'll remember even the trade lanes gets red